Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs371768841 chr7:6779019 TAA/T 8.86E-5 489 30.97 30.2 35.28 KM Plot
PRAD rs371886996 chr12:10671688 C/T 1.09E-7 476 30.53 32.63 19.1 KM Plot
PRAD rs372694081 chr11:50745811 A/C 2.38E-8 477 31.37 27.97 24.27 KM Plot
PRAD rs373337730 chr17:62977367 CAA/C 1.16E-8 483 30.73 31.37 19.63 KM Plot
PRAD rs3734431 chr6:52843429 A/G 6.51E-8 488 31.23 32.35 20.93 KM Plot
PRAD rs3737756 chr1:31741816 A/G 2.29E-6 493 22.83 31.27 31.27 KM Plot
PRAD rs373813553 chr2:178785819 CTT/C 4.19E-5 490 30.8 31.93 20.48 KM Plot
PRAD rs3738640 chr1:16344466 C/T 2.41E-5 492 31.9 25.93 67.52 KM Plot
PRAD rs3738643 chr1:16343324 G/C 2.41E-5 492 31.9 25.93 67.52 KM Plot
PRAD rs3738646 chr1:16332679 T/C 2.4E-5 493 31.9 25.83 67.52 KM Plot
PRAD rs3739773 chr9:72866927 C/T 1.73E-5 493 30.8 31.35 22.45 KM Plot
PRAD rs3739774 chr9:72866812 G/A 1.73E-5 493 30.8 31.35 22.45 KM Plot
PRAD rs3743559 chr16:58035429 C/A 2.34E-5 485 30.75 31.8 44.3 KM Plot
PRAD rs3743561 chr16:58036351 A/T 2.34E-5 485 30.75 31.8 44.3 KM Plot
PRAD rs374499476 chr5:7305529 C/T 2.57E-8 471 30.78 29.97 10.07 KM Plot